viola.Bedpe.to_bedpe

Bedpe.to_bedpe(path_or_buf: str, custom_infonames: Iterable[str] = [], confidence_intervals: bool = False)

to_beddpe(path_or_buf, custom_infonames, confidence_intervals) Return a BEDPE file.

Parameters

• path_or_buf (str, optional) – File path to save the BEDPE file.

• custom_infonames (list-like[str]) – The table names of INFOs to append.

• confidence_intervals (bool, default False) – Whether or not to consider confidence intervals of the breakpoints. If True, confidence intervals for each breakpoint are represented by [start1, end1) and [start2, end2), respectively. Otherwise, breakpoints are represented by a single-nucleotide resolution.