viola.MultiVcf.to_bedpe_like

MultiVcf.to_bedpe_like(custom_infonames=[], add_filters, add_formats, confidence_intervals: bool=False)

Return a DataFrame in bedpe-like format. When specified, you can add INFOs, FILTERs, and FORMATs as additional columns.

Parameters

• custom_infonames (list-like[str]) – The table names of INFOs to append.

• add_filters (bool, default False) – sth

• add_formats (bool, default False) – sth

• confidence_intervals (bool, default False) – Whether or not to consider confidence intervals of the breakpoints. If True, confidence intervals for each breakpoint are represented by [start1, end1) and [start2, end2), respectively. Otherwise, breakpoints are represented by a single-nucleotide resolution.

Returns

A Dataframe in bedpe-like format. The columns include at least the following: [‘chrom1’, ‘start1’, ‘end1’, ‘chrom2’, ‘start2’, ‘end2’, ‘name’, ‘score’, ‘strand1’, ‘strand2’]

Return type

DataFrame