viola.Vcf.get_microhomology

Vcf.get_microhomology(fasta, max_homlen=200)

Infer microhomology length and sequence in each breakpoint. The results will be appended as ‘HOMLEN’ and ‘HOMSEQ’ INFO, respectively.

Parameters

• fasta (Fasta) – A Fasta object.

• max_homlen (int) – Maximum length of microhomology to be considered.