viola.read_bedpe

read_bedpe(filepath, header_info_path, svtype_col_name)

Read a BEDPE file of SV and return Bedpe object.

Parameters

• filepath (str or file-like object) – Acceptable type is equivalent to that of pandas.read_csv().

• header_info_path – Haven’t been coded yet.

• svtype_col_name (str or None, default None) – If the bedpe file has a svtype column, please pass the column name to this argument.

• patient_name (str or None, default None) – The patient name

Return type

A Bedpe object