User Guide

• Viola’s Data Structure – Why tidy data?
  • Tables composing Vcf object
• Filtering Systems
  • Completeness: ID based filtering system
• Flexible BEDPE generation
• Specification of SV positions in Viola
  • Deletion
  • Duplication
  • Inversion
  • Translocation
  • Single Breakends
• VCF Merging
  • Default Behaviour
  • INFO relating to VCF Merging
  • Export VCF file
• CLI Tutorial
  • Preparation
  • Overview
  • VCF to BEDPE
  • Feature Matrix Generation
• Annotation with Viola
  • Microhomology Prediction