Index

_

__init__() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method)

A

add_info_table() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method) annotate_bed() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method)

append_filters() (Vcf method) append_formats() (Vcf method) append_infos() (Bedpe method) (Vcf method) as_bedpe() (Vcf method) as_bedpe_multi() (MultiVcf method)

B

Bedpe (class in viola)

breakend2breakpoint() (Vcf method)

C

calculate_info() (Bedpe method) classify_manual_svtype() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method)

concat() (in module viola) copy() (Bedpe method) (Vcf method)

D

drop_by_id() (Vcf method)

F

filter() (Bedpe method), [1] (MultiBedpe method) (MultiVcf method) (Vcf method)

filter_by_id() (Bedpe method), [1] (MultiBedpe method) (MultiVcf method) (Vcf method)

G

get_feature_count_as_data_frame() (MultiBedpe method) (MultiVcf method) get_feature_count_as_series() (Bedpe method) (Vcf method) get_microhomology() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method)

get_table() (Bedpe method), [1] (MultiBedpe method) (MultiVcf method) (Vcf method)

I

ids (Bedpe property) (MultiBedpe property) (MultiVcf property) (Vcf property)

integrate() (Vcf method)

M

merge() (Bedpe method) (in module viola) (Vcf method)

MultiBedpe (class in viola) MultiVcf (class in viola)

R

read_bedpe() (in module viola) read_bedpe_multi() (in module viola) read_vcf() (in module viola) read_vcf_multi() (in module viola) remove_info_table() (Bedpe method) (Vcf method)

rename_info() (Bedpe method) (Vcf method) replace_svid() (Vcf method) replace_table() (Bedpe method) (Vcf method)

S

set_value_for_info_by_id() (Bedpe method) (Vcf method) sv_count (Bedpe property) (MultiBedpe property) (MultiVcf property) (Vcf property)

SV_signature_extractor() (in module viola)

T

table_list (Bedpe property) (MultiBedpe property) (MultiVcf property) (Vcf property) to_bedpe() (Bedpe method) (Vcf method)

to_bedpe_like() (Bedpe method), [1] (MultiBedpe method) (MultiVcf method) (Vcf method) to_vcf() (Vcf method) to_vcf_like() (Vcf method)

V

Vcf (class in viola) view() (Bedpe method) (MultiBedpe method) (MultiVcf method) (Vcf method)